Jun 05, 2026

Spring Field Season Kick Off

Spring marks the busy season for the Estuary Program’s field staff. Our monitoring team tackles bioassessment surveys, expanded streamflow monitoring, and eelgrass assessments, all on top of routine efforts like water quality monitoring, sonde deployments, and moreEven though our schedules are packed, this time of year is always welcomed as our staff are excited to get outside and see how conditions are changing.

Keep reading to learn more about what we’ve been up to in the field during this busy season. 

Bioassessment Season Begins!

Each spring, the Estuary Program conducts freshwater bioassessment monitoring throughout the Morro Bay watershed. Surveys involve taking numerous creek measurements and collecting benthic macroinvertebrates at ten unique locations. To read more about bioassessment monitoring, please visit www.mbnep.org/bioassessment 

The survey season kicked off with a training led by seasoned monitoring program staff. The training brought together junior staff from the Estuary Program, staff from the Central Coast Ambient Monitoring Program (CCAMP)Watershed Stewards Program (WSP) Corpsmembers, and volunteers from the CA Conservation Corps (CCC). Attendees received hands-on training on topics including macroinvertebrate collection, channel dimension measurements, slope assessments, and more. 

Monitoring Coordinator, Fiona, holds up a rock with a small mayfly larva on it. Mayflies are generally considered indicators of good water quality.

Several days after the training, our team embarked on the first bioassessment survey of the year at upper Dairy Creek, near El Chorro Regional Park. While this stretch of creek often goes dry in the summer months, it can support a healthy diversity of aquatic benthic macroinvertebrates in the spring. Our team observed a number of macroinvertebrates during sampling including mayflies, caddisflies, and stoneflies. These three orders of insects typically indicate good water quality conditions. 

The Estuary Program’s monitoring team completed the first bioassessment survey of the year on Upper Dairy Creek. The photo above shows a WSP Corpsmember collecting canopy cover data using a specialized tool called a densiometer.

The Estuary Program’s monitoring team will conduct ten bioassessment surveys throughout the field season. Our team will assess habitat conditions on Chorro Creek, Pennington Creek, Dairy Creek, San Bernardo Creek, San Luisito Creek, and Upper Los Osos Creek. We look forward to sharing highlights from our field season soon

Spring Low Flow Monitoring

Spring is a critical time of year for sensitive aquatic species like resident rainbow trout and steelhead. Because these fish typically spawn between February and Aprilthe success of their offspring relies on the presence of cool, clean, flowing water. 

Volunteers collect spring streamflow data from a site on Dairy Creek.

The Estuary Program and its volunteers conduct focused streamflow measurements every other week during the spring and summer to better understand if local creeks have enough water to meet the ecological needs of steelhead and other sensitive species. Data collected through this expanded monitoring effort will be used to develop target streamflow criteria for each monitoring site. We are several years into this monitoring effort and are expecting to develop our targets soon. 

To learn more about our low flow monitoring effortscheck out this blog from 2022https://www.mbnep.org/2022/10/07/field-updates-september-2022-low-flow-monitoring/  

Gearing Up for Low Tides

In the spring, Morro Bay experiences some of the lowest tides of the year due to the Earth’s position relative to the Sun and Moon. This positioning results in a unique gravitational pull that causes very high tides coupled with very low tides. Estuary Program staff take advantage of the lowest tides to monitor eelgrass, a flowering plant that grows in the intertidal zone of Morro Bay.  

Estuary Program staff monitor eelgrass during the lowest tides of the year. The graph above shows local tide predictions based on NOAA’s Port San Luis monitoring station. The areas highlighted in red show the ideal tidal range for monitoring Morro Bay’s intertidal eelgrass.

This month, Estuary Program staff and WSP Corpsmembers will head out to several locations throughout Morro Bay to monitor eelgrass health. Our team will assess eelgrass density, algal cover, number of flowering shoots, and presence of any plant or animals living on the eelgrass blades (also called “epiphytes or “epifauna)Additionally, we will collect blades and analyze them to better understand the presence and severity of eelgrass wasting disease, which is caused by a destructive slime mold called Labyrinthula. 

Estuary Program staff and WSP Corpsmembers monitor intertidal eelgrass near Morro Rock.

Want to Learn More? 

To stay up to date with the Estuary Program’s ongoing monitoring efforts, be sure to subscribe to our blog and our seasonal newsletter. Past versions of our newsletter are available on our website at www.MBNEP.org/newsletterYou can also follow us on Instagram at @morrobayNEP and on Facebook at www.facebook.com/MBestuary 

Staff from the Central Coast Ambient Monitoring Program (CCAMP) collect canopy cover data during a bioassessment survey on San Luisito Creek.

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